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[CheckCIF] C级警报PLAT041和PLAT042需要消除吗

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C级警报PLAT041PLAT042需要消除吗
案例来源:CCDC[1] 2182247.Nat. Synth. 2025, DOI[2]: 10.1038/s44160-025-00789-5.
案例结构如1所示(由ChemBioDraw[3]绘制)。
1 案例结构
该晶体数据精修结果如2所示(由Olex2[4]呈现),无AB级警报,但存在C级警报PLAT041(参阅推文“CheckCIF-PLAT041”)和PLAT042(参阅推文“CheckCIF-PLAT042”)(由PLATON[5]呈现)。
2 C级警报PLAT041PLAT042
论文中认为该结构是一个双核钍配合物,不论是平面结构图还是晶体结构图皆绘制为双核结构,如3所示。
3 论文中CCDC 2182247结构图
其发表的CIF[6]文件中分子式也是双核结构,如4所示。
4 CIF中分子式
这种情况还会使得验证报告中的Z值的计算值(Calculated)与报告值(Reported)不一致,如5所示。
5 验证报告中的Z
但这些其实都不是问题,晶体数据主要是为论文的观点服务的,上述这些问题都是细枝末节,无关大雅,论文中按照双核结构讨论,那么CIF中分子式就按照双核结构给出,即便这会触发PLAT041PLAT042警报以及Z值的计算值(Calculated)与报告值(Reported)不一致。
如果CIF中分子式的给定值与论文中讨论的结构不一致,则可能会被审稿人指出,并要求修改,参阅推文“晶体数据审稿意见-分子式单元基准设置(Z'值或Z值设置)”。
总之,不要唯“验证报告”(checkcif.pdf)论,论文讨论的内容才是最重要的,不要为了消除警报而而消除警报。
相关视频:
C级警报PLAT041PLAT042需要消除吗:https://www.bilibili.com/video/BV1wJjFztEcK
参考文献
[1]    (a) Allen, F. H.The Cambridge Structural Database: A Quarter of a Million Crystal Structuresand Rising. Acta Cryst. 2002, B58, 380–388. DOI:10.1107/S0108768102003890. (b) Groom, C. R.; Bruno, I. J.; Lightfoot, M.P.; Ward, S. C. The Cambridge Structural Database. Acta Cryst. 2016, B72, 171–179. DOI:10.1107/S2052520616003954. (c) Mitchell, J.; Robertson, J. H.; Raithby,P. R. Cambridge Crystallographic Data Centre (CCDC). Comprehensive Coordination Chemistry III 2021, 413–437. DOI:10.1016/B978-0-12-409547-2.14829-2.
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[3]    (a) Klein, F. M.CS ChemDraw Pro,1 Version 3.1 for Windows. J.Chem. Inf. Comput. Sci. 1995, 35, 166–167. DOI: 10.1021/ci00023a026. (b)Cousins, K. R. ChemDraw 6.0 Ultra CambridgeSoft Corporation, 100 Cambridge ParkDrive, Cambridge, MA 02140. http://www.camsoft.com. Commercial Price:  $1395.Academic Price:  $699. J. Am. Chem. Soc. 2000, 122, 10257–10258. DOI: 10.1021/ja0047572.(c) Buntrock, R. E. ChemOffice Ultra 7.0. J.Chem. Inf. Comput. Sci. 2002, 42, 1505–1506. DOI: 10.1021/ci025575p. (d) Li, Z.; Wan, H.; Shi, Y.;Ouyang, P. Personal Experience with Four Kinds of Chemical Structure DrawingSoftware: Review on ChemDraw, ChemWindow, ISIS/Draw, and ChemSketch. J. Chem.Inf. Comput. Sci. 2004, 44, 1886–1890. DOI: 10.1021/ci049794h.(e) Mendelsohn, L. D. ChemDraw8 Ultra, Windows and Macintosh Versions. J.Chem. Inf. Comput. Sci. 2004, 44, 2225–2226. DOI: 10.1021/ci040123t. (f) Cousins, K. R. ChemDrawUltra 9.0. CambridgeSoft, 100 CambridgePark Drive, Cambridge, MA 02140. www.cambridgesoft.com. See Web site for pricing options. J. Am. Chem. Soc. 2005, 127, 4115–4116. DOI:10.1021/ja0410237. (g) Zielesny, A. Chemistry Software PackageChemOffice Ultra 2005. J. Chem. Inf.Model. 2005, 45, 1474–1477. DOI:10.1021/ci050273j. (h) Mills, N. ChemDraw Ultra 10.0 CambridgeSoft, 100CambridgePark Drive, Cambridge, MA 02140. www.cambridgesoft.com. CommercialPrice:  $1910 for download, $2150 for CD-ROM; Academic Price:  $710 fordownload, $800 for CD-ROM. J. Am. Chem.Soc. 2006, 128, 13649–13650. DOI: 10.1021/ja0697875. (i) Kerwin, S. M.ChemBioOffice Ultra 2010 Suite. J. Am. Chem.Soc. 2010, 132, 2466–2467. DOI: 10.1021/ja1005306. (j) Milne, G. W. A. SoftwareReview of ChemBioDraw 12.0. J. Chem. Inf.Model. 2010, 50, 2053. DOI:10.1021/ci100385n. (k) Narayanaswamy, V. K.; Rissdörfer, M.; Odhav, B.Review on CambridgeSoft ChemBioDraw Ultra 13.0v. Int. J. Theor. Appl. Sci. 2013,5, 43–49.
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声明:本文仅代表个人观点,笔者学识有限,资料整理过程中可能存在疏漏错误,请不吝指正。
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