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[CrysAlisPro/APEX] 采用不同数据给出不同Flack参数结果案例1

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声明:本文仅代表个人观点,笔者学识有限,资料整理过程中难免存在疏漏谬误,请不吝指正。
采用不同数据给出不同Flack参数结果案例1
案例来源:CCDC [1]: 2492804. DOI [2]: 10.5517/ccdc.csd.cc2pnz1d.(Org. Lett. 2026, 28, 1283–1288. DOI: 10.1021/acs.orglett.5c05093.)
案例结构为diethyl (R)-(1-([1,1'-biphenyl]-4-yl)-3-phenylpropyl)phosphonate,如1所示(由ChemBioDraw[3]绘制)。
1 案例结构
该晶体用布鲁克D8Venture单晶X射线衍射仪测试,用钼靶作为辐射光源,3秒曝光时间测定晶胞,收集一轮Fast Scan共计180帧衍射图(141 MB),其衍射图如2所示(由APEX6 [4]呈现)。
2 Fast Scan衍射图
用这Fast Scan180帧衍射图处理数据的结果如3所示(由Olex2[5]呈现),Flack参数 [6]0.08(7)
3 Fast Scan数据处理结果
除了测定晶胞的Fast Scan,也收集了完整数据,5秒曝光时间,共收集3轮数据合计413帧衍射图(322 MB),其衍射图如4所示。
4 正式数据衍射图
3轮数据处理结果如5所示,Flack参数为0.13(3)
5 完整数据处理结果(CCDC: 2532252
相关视频:
单晶结构解析练习735(文献案例-数据还原-无序处理)https://www.bilibili.com/video/BV1oAZiBuE9c
数据下载:
提取码: v6a3
参考文献
[1]    (a)Allen, F. H. The Cambridge Structural Database: A Quarter of a Million CrystalStructures and Rising. Acta Cryst. 2002, B58, 380–388. DOI:10.1107/S0108768102003890. (b) Groom, C. R.; Bruno, I. J.; Lightfoot, M.P.; Ward, S. C. The Cambridge Structural Database. Acta Cryst. 2016, B72, 171–179. DOI:10.1107/S2052520616003954. (c) Mitchell, J.; Robertson, J. H.; Raithby,P. R. Cambridge Crystallographic Data Centre (CCDC). Comprehensive Coordination Chemistry III 2021, 413–437. DOI: 10.1016/B978-0-12-409547-2.14829-2.
[2]    (a)International Organization for Standardization (2012). ISO 26324:2012. Information and Documentation – DigitalObject Identifier System.http://www.iso.org/iso/catalogue_detail.htm?csnumber=43506. (b) McDonald J. D.;Levine-Clark, M. Encyclopedia of Libraryand Information Sciences. Fourth Edition, CRC Press, 2017. DOI: 10.1081/e-elis4. (c) Liu, J. Digital ObjectIdentifier (DOI) and DOI Services: An Overview. Libri 2021, 71, 349‒360. DOI:10.1515/libri-2020-0018. (d) International Organization forStandardization (2022). ISO 26324:2022. Informationand Documentation – Digital Object Identifier System.https://www.iso.org/standard/81599.html
[3]    (a)Klein, F. M. CS ChemDraw Pro,1 Version 3.1 for Windows. J. Chem. Inf. Comput.Sci. 1995, 35, 166–167. DOI: 10.1021/ci00023a026. (b)Cousins, K. R. ChemDraw 6.0 Ultra CambridgeSoft Corporation, 100 Cambridge ParkDrive, Cambridge, MA 02140. http://www.camsoft.com. Commercial Price:  $1395.Academic Price:  $699. J. Am. Chem. Soc. 2000, 122, 10257–10258. DOI: 10.1021/ja0047572.(c) Buntrock, R. E. ChemOffice Ultra 7.0. J.Chem. Inf. Comput. Sci. 2002, 42, 1505–1506. DOI: 10.1021/ci025575p. (d) Li, Z.; Wan, H.; Shi, Y.;Ouyang, P. Personal Experience with Four Kinds of Chemical Structure DrawingSoftware: Review on ChemDraw, ChemWindow, ISIS/Draw, and ChemSketch. J. Chem.Inf. Comput. Sci. 2004, 44, 1886–1890. DOI: 10.1021/ci049794h.(e) Mendelsohn, L. D. ChemDraw8 Ultra, Windows and Macintosh Versions. J.Chem. Inf. Comput. Sci. 2004, 44, 2225–2226. DOI: 10.1021/ci040123t. (f) Cousins, K. R. ChemDrawUltra 9.0. CambridgeSoft, 100 CambridgePark Drive, Cambridge, MA 02140. www.cambridgesoft.com. See Web site for pricing options. J. Am. Chem. Soc. 2005, 127, 4115–4116. DOI:10.1021/ja0410237. (g) Zielesny, A. Chemistry Software PackageChemOffice Ultra 2005. J. Chem. Inf.Model. 2005, 45, 1474–1477. DOI:10.1021/ci050273j. (h) Mills, N. ChemDraw Ultra 10.0 CambridgeSoft, 100CambridgePark Drive, Cambridge, MA 02140. www.cambridgesoft.com. CommercialPrice:  $1910 for download, $2150 for CD-ROM; Academic Price:  $710 fordownload, $800 for CD-ROM. J. Am. Chem.Soc. 2006, 128, 13649–13650. DOI: 10.1021/ja0697875. (i) Kerwin, S. M.ChemBioOffice Ultra 2010 Suite. J. Am. Chem.Soc. 2010, 132, 2466–2467. DOI: 10.1021/ja1005306. (j) Milne, G. W. A. SoftwareReview of ChemBioDraw 12.0. J. Chem. Inf.Model. 2010, 50, 2053. DOI:10.1021/ci100385n. (k) Narayanaswamy, V. K.; Rissdörfer, M.; Odhav, B.Review on CambridgeSoft ChemBioDraw Ultra 13.0v. Int. J. Theor. Appl. Sci. 2013,5, 43–49.
[4]    Bruker(2024). APEX6 (Version 2025.6-0). Program for Data Collection on AreaDetectors. Bruker AXS Inc., Madison, Wisconsin, USA.
[5]    Dolomanov,O. V.; Bourhis, L. J.; Gildea, R. J.; Howard, J. A. K.; Puschmann, H. OLEX2: A Complete Structure Solution,Refinement and Analysis Program. J. Appl. Cryst. 2009, 42, 339–341. DOI: 10.1107/S0021889808042726.
[6]    Flack,H. D. On Enantiomorph-Polarity Estimation. Acta Cryst. 1983,A39, 876–881. DOI: 10.1107/S0108767383001762.

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