晶体测试案例39(薄片晶体) 案例来源:CCDC[1] 2443608. DOI[2]: 10.5517/ccdc.csd.cc2n0s2k. 案例结构为2-氯-1-甲基-1H-苯并咪唑(CAS: 1849-02-1),如图1所示(由ChemBioDraw[3]绘制)。 ▲图1 案例结构 晶体培养方法为单一溶剂挥发法,溶剂为甲苯(CAS: 108-88-3),容器为试管,敞口挥发(参阅视频“培养单晶之过滤-挥发法:https://www.bilibili.com/video/BV1mkdWYZEYJ”)。 取样品约50毫克,加入2毫升甲苯,超声溶解,未溶解完全,用注射器+过滤头过滤至试管中,敞口挥发,在有溶剂的情况下未观察到结晶,溶剂挥发干后,发现有片状晶体,如图2所示。 ▲图2 试管底部的片状晶体 用刮勺将其捞出,至于载玻片上用二甲基硅油(CAS: 9006-65-9)覆盖,在显微镜下观察,如图3所示。 ▲图3 显微镜下的晶体 从中切割挑选表面干净(无小晶体或固体杂质附着)、无裂痕的晶体用于测试。 ▲图4 晶体尺寸测量 ▲图5 晶体尺寸测量 ▲图6 晶体尺寸测量 用钼靶测试,发现衍射还不错,曝光时间设置为2秒,花费10分钟测得完整数据(3轮共284帧衍射照片,总大小为215 MB),其衍射图如图7所示(由APEX4[5]呈现)。 ▲图7 衍射图 最终经数据还原解析后结果如图8(由Olex2[6]呈现)所示,无AB级警报(验证报告由PLATON[7]呈现)。 ▲图8 最终结果 相关视频: 单晶结构解析练习557(数据还原):https://www.bilibili.com/video/BV12boHYQEuk 数据下载: 提取码: 4a29 参考文献 [1] (a) Allen, F. H.The Cambridge Structural Database: A Quarter of a Million Crystal Structuresand Rising. Acta Cryst. 2002, B58, 380–388. DOI:10.1107/S0108768102003890. (b) Groom, C. R.; Bruno, I. J.; Lightfoot, M.P.; Ward, S. C. The Cambridge Structural Database. Acta Cryst. 2016, B72, 171–179. DOI:10.1107/S2052520616003954. (c) Mitchell, J.; Robertson, J. H.; Raithby,P. R. Cambridge Crystallographic Data Centre (CCDC). Comprehensive Coordination Chemistry III 2021, 413–437. DOI: 10.1016/B978-0-12-409547-2.14829-2. [2] (a) InternationalOrganization for Standardization (2012). ISO 26324:2012. Information and Documentation – Digital Object Identifier System. http://www.iso.org/iso/catalogue_detail.htm?csnumber=43506. (b) McDonald J. D.;Levine-Clark, M. Encyclopedia of Libraryand Information Sciences. Fourth Edition, CRC Press, 2017. DOI: 10.1081/e-elis4. (c) Liu, J. Digital ObjectIdentifier (DOI) and DOI Services: An Overview. Libri 2021, 71, 349‒360. DOI:10.1515/libri-2020-0018. (d) International Organization forStandardization (2022). ISO 26324:2022. Informationand Documentation – Digital Object Identifier System. https://www.iso.org/standard/81599.html[3] (a) Klein, F. M.CS ChemDraw Pro,1 Version 3.1 for Windows. J. Chem. Inf. Comput. Sci. 1995, 35, 166–167. DOI: 10.1021/ci00023a026. (b)Cousins, K. R. ChemDraw 6.0 Ultra CambridgeSoft Corporation, 100 Cambridge ParkDrive, Cambridge, MA 02140. http://www.camsoft.com. Commercial Price: $1395.Academic Price: $699. J. Am. Chem. Soc. 2000, 122, 10257–10258. DOI: 10.1021/ja0047572.(c) Buntrock, R. E. ChemOffice Ultra 7.0. J. Chem. Inf. Comput. Sci. 2002, 42, 1505–1506. DOI: 10.1021/ci025575p. (d) Li, Z.; Wan, H.; Shi, Y.;Ouyang, P. Personal Experience with Four Kinds of Chemical Structure DrawingSoftware: Review on ChemDraw, ChemWindow, ISIS/Draw, and ChemSketch. J. Chem. Inf. Comput. Sci. 2004, 44, 1886–1890. DOI: 10.1021/ci049794h.(e) Mendelsohn, L. D. ChemDraw8 Ultra, Windows and Macintosh Versions. J. Chem. Inf. Comput. Sci. 2004, 44, 2225–2226. DOI: 10.1021/ci040123t. (f) Cousins, K. R. ChemDrawUltra 9.0. CambridgeSoft, 100 CambridgePark Drive, Cambridge, MA 02140. www.cambridgesoft.com. See Web site for pricing options. J. Am. Chem. Soc. 2005, 127, 4115–4116. DOI:10.1021/ja0410237. (g) Zielesny, A. Chemistry Software PackageChemOffice Ultra 2005. J. Chem. Inf.Model. 2005, 45, 1474–1477. DOI:10.1021/ci050273j. (h) Mills, N. ChemDraw Ultra 10.0 CambridgeSoft, 100CambridgePark Drive, Cambridge, MA 02140. www.cambridgesoft.com. CommercialPrice: $1910 for download, $2150 for CD-ROM; Academic Price: $710 fordownload, $800 for CD-ROM. J. Am. Chem. Soc. 2006, 128, 13649–13650. DOI: 10.1021/ja0697875. (i) Kerwin, S. M.ChemBioOffice Ultra 2010 Suite. J. Am. Chem. Soc. 2010, 132, 2466–2467. DOI: 10.1021/ja1005306. (j) Milne, G. W. A. SoftwareReview of ChemBioDraw 12.0. J. Chem. Inf.Model. 2010, 50, 2053. DOI:10.1021/ci100385n. (k) Narayanaswamy, V. K.; Rissdörfer, M.; Odhav, B.Review on CambridgeSoft ChemBioDraw Ultra 13.0v. Int. J. Theor. Appl. Sci. 2013, 5, 43–49. [4] Bruker (2018). APEX3 (Version 2018.7-2). Program for Data Collection on Area Detectors.Bruker AXS Inc., Madison, Wisconsin, USA. [5] Bruker (2021). APEX4 (Version 2021.4-1). Program for Data Collection on AreaDetectors. Bruker AXS Inc., Madison, Wisconsin, USA. [6] Dolomanov, O. V.;Bourhis, L. J.; Gildea, R. J.; Howard, J. A. K.; Puschmann, H. OLEX2: A Complete Structure Solution,Refinement and Analysis Program. J. Appl. Cryst. 2009, 42, 339–341. DOI: 10.1107/S0021889808042726. [7] (a) Spek, A. L. Single-CrystalStructure Validation with the Program PLATON.J. Appl. Cryst. 2003, 36, 7–13. DOI: 10.1107/S0021889802022112.(b) Spek, A. L. StructureValidation in Chemical Crystallography. ActaCryst. 2009, D65, 148–155. DOI:10.1107/S090744490804362X. (c) Spek, A. L. What Makes a Crystal Structure Report Valid? Inorg. Chim. Acta 2018, 470, 232–237. DOI:10.1016/j.ica.2017.04.036. (d) Spek, A. L. checkCIFValidation ALERTS: What They Mean and How to Respond. Acta Cryst. 2020, E76, 1–11. DOI: 10.1107/S2056989019016244. 声明:本文仅代表个人观点,笔者学识有限,资料整理过程中可能存在疏漏错误,请不吝指正。 如需PDF文档,请从以下链接下载: 通过网盘分享的文件:晶体测试案例39(薄片晶体).pdf
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